Run Regedit and navigate to HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Control\Session Manager. Now double-click on BootExecute. When the dialog box opens, change the value to autocheck autochk * and click on OK. Close Regedit. When you restart, chkdisk will not run.
If you want to make a .reg file to import it instead, just copy the info below and paste it into a text file and rename the extension from .txt to .reg, then double click the file to import into the registry.
Windows Registry Editor Version 5.00
[HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Control\Session Manager]
"BootExecute"=hex(7):61,00,75,00,74,00,6f,00,63,00,68,00,65,00,63,00,6b,00,20,\
00,61,00,75,00,74,00,6f,00,63,00,68,00,6b,00,20,00,2a,00,00,00,00,00